rs33158653 SNP Detail

Summary

• ID
  rs33158653
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57313597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG GAGGAGCTGC TTTTGACATT
  K
  CAGTCCCGGC CCCTTGAGAA CTGGT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39501260	mCV23457914	ABI	CRAMUS_MOUSE	f	SNP		T	G					G		G
ss62804042	NES17359545	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G	G		G	G	T	G	T	T	G	T	G
ss145809286	ENSMUSSNP5261988	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33158653					SNP	T	T	G	G	G	G	G	G	G	G	T	G	T	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62804042	NES17359545	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57313597 () rs orientation: forward

Symbol	Name	Function Class
Gtf2f1	general transcription factor IIF, polypeptide 1	within coordinates
Rr529238	regulatory region 529238	528 bp proximal
Rr529239	regulatory region 529239	700 bp proximal
Tssr148849	transcription start site region 148849	1884 bp upstream
Tssr148850	transcription start site region 148850	1769 bp upstream
Tssr148851	transcription start site region 148851	1705 bp upstream
Tssr148852	transcription start site region 148852	1128 bp upstream
Tssr148853	transcription start site region 148853	466 bp downstream