rs33159177 SNP Detail

Summary

• ID
  rs33159177
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24600019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGATAGTGC TTCAGGATTA GCTGAAATAG TTCTAAATAA
  TCAAAAGCGA TACCTGAGCT GGCGAGATGA TTTAGCAGTT AAAGGCACTT GCTACCAAGC
  Y
  TGAAGACGTG GATTCTACTT GAAAACTCAT GGTAGGAGGT ATGCAGTTTC GGCAAATTAT
  AATTATCCTC TTACTTCCAC TATCCCAAAC CCACTAAAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45744554	mCV25442818	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss148093016	ENSMUSSNP3200678	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		T
ss321495659	CHEV_5_23900839	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33159177					SNP	C	C	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24600019 () rs orientation: forward

Symbol	Name	Function Class
Abcb8	ATP-binding cassette, sub-family B member 8	within coordinates
Cpgi15597	CpG island 15597	265 bp distal
Rr112283	regulatory region 112283	1419 bp distal
Rr112284	regulatory region 112284	1182 bp proximal
Rr124925	regulatory region 124925	within coordinates
Rr398998	regulatory region 398998	1312 bp downstream
Rr398999	regulatory region 398999	551 bp downstream
Tssr45411	transcription start site region 45411	1357 bp downstream
Tssr45412	transcription start site region 45412	591 bp downstream