rs33159357 SNP Detail

Summary

• ID
  rs33159357
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74499259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCC TATCAGCACG TGCCTGGCTA
  Y
  ATCGACATGG TGTCCACTTT TGGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45244053	mCV23154308	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss146763730	ENSMUSSNP5414040	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33159357					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74499259 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11788	CpG island 11788	1462 bp distal
Cpgi11789	CpG island 11789	within coordinates
Gm31790	predicted gene, 31790	1235 bp downstream
Hoxd13	homeobox D13	within coordinates
Igs15	intergenic site 15	within coordinates
Rr559338	regulatory region 559338	595 bp distal
Rr559339	regulatory region 559339	1705 bp proximal
Tssr18389	transcription start site region 18389	1642 bp downstream
Tssr18390	transcription start site region 18390	686 bp downstream