rs33159600 SNP Detail

Summary

• ID
  rs33159600
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:39596460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGTCAAG AGTGGAAAAG
  CTGGTTTAGA ATCACTCAAA AAAGACAACT GAGCATAAGC TTACAGTGCA TTTAAGGAAG
  GGAATTAGAT TCTGTCAAGG AAACAATTCA TCAAGCTCTG TGTTTTCTCA TTTAAAATTC
  TGAACCATGA AGACTCAACC TCTTGTTGAA CTGCAGCTTG TACATAGAGG GCATGAACCA
  R
  GCCCATGAGG GAGGTATGCT ATCTCAGGCT AAAGGGACAG ATAATGAAAA GCTGTCAATA
  AAGGAAGTTT AGGAGTTCTA TAAGGAAGAC ACATTTCAGG ACAAAGCAGG ATGAGGCTGT
  AGTACAGCCG TCCTTGGATG AAACAGTTTC TCCCTGAAGG GCCACACCAA GCTAAAGGGC
  GACTGTCACA CCTGCATCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47264150	NES11019317	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33159600					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47264150	NES11019317	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:39596460 () rs orientation: forward

Symbol	Name	Function Class
Rnf149	ring finger protein 149	within coordinates
Rr409899	regulatory region 409899	1009 bp distal
Rr409900	regulatory region 409900	1694 bp proximal
Tssr6390	transcription start site region 6390	1894 bp downstream
Tssr11384	transcription start site region 11384	1836 bp upstream
Tssr11385	transcription start site region 11385	1706 bp upstream
Tssr11386	transcription start site region 11386	1357 bp upstream
Tssr11387	transcription start site region 11387	440 bp downstream
Tssr11388	transcription start site region 11388	922 bp downstream
Tssr11389	transcription start site region 11389	983 bp downstream
Tssr11390	transcription start site region 11390	1552 bp downstream
Tssr11391	transcription start site region 11391	1582 bp downstream