rs33159603 SNP Detail

Summary

• ID
  rs33159603
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:39597619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCAAGTTT ACACATTGGA
  CACGTTCGGT GATCCAAAAG CCATGGGTCA ATGCATATTC TATGAAAAAT ATGCCTAAAA
  AAATTAAGTA TGTATTAATG TCTTAAAATA AATGTTTGCA TATCTTATAA AGGAAATAAC
  GCATTTTACC AACACACCCT GTATAAAGTG AGCCAACCAC ACATTAACAT GAAGTCCACC
  Y
  ACTTGTCTAA GTTATTTTCC AGTCTATTTC CCACTTAAGA TTTGGACTTA GTGATGCTTT
  TTTTTTTCTT TTAAAGTGAA AGCTCTTCAT TAAACAAAAA TATGGTAGAT CTATTTCCAC
  CACATACTAA ATCGTGTGTG TGTGTGTGTG TGTGTGTGTG CGCGCGCGCG TGTGTGCGCG
  CATGTGTGTG TATGAGCGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47264153	NES11019318	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33159603					SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47264153	NES11019318	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:39597619 () rs orientation: forward

Symbol	Name	Function Class
Rnf149	ring finger protein 149	within coordinates
Rr409900	regulatory region 409900	535 bp proximal
Tssr11387	transcription start site region 11387	709 bp upstream
Tssr11388	transcription start site region 11388	213 bp upstream
Tssr11389	transcription start site region 11389	158 bp upstream
Tssr11390	transcription start site region 11390	393 bp downstream
Tssr11391	transcription start site region 11391	423 bp downstream