rs33159710 SNP Detail

Summary

• ID
  rs33159710
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:46875592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCTGTAA AAAAAGGCTT
  TTTTATTGAG AGCAGCGAGT GTAAAAAAAA AAAAAAAACA CAAAAAAACA AAGAAAACAA
  AAACAAAACC ATAAAACAAA CAAACAATAA CAACAACAAT AAAGTATGAG GCCAGGGTGG
  CCCTCCCTCC CTACTTCCTC CAGGGTCCAC CCAGACCTCC CCAAGCCCAC CCACCCCACG
  Y
  TGCAATAATA CAAAGGCCGC CCATGGTGCG TACAAAAGGG GCGGGTCATA TAAGTGTCAA
  AAGCTCCCAA ACGCTCTTGT TCATCTGCCA GGCACTTAGG GTGAGGAGAG GAGACTGAGG
  CCAGGAGTCT GGCTTAGTGT GCACAAGCCC ACGGTGGGGA GGACTCCACT GCTGTGACCT
  CCTAGACCCC CCACTAGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss39501400	mCV22916598	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss145700376	ENSMUSSNP4513192	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs33159710					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46875592 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptk7	PTK7 protein tyrosine kinase 7			mRNA-UTR
				Noncoding-Transcript-Variant