rs33160298 SNP Detail

Summary

• ID
  rs33160298
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127189362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAGCAGA AGTTGCTGTC
  CTGGAACTCA CTTTGTAGAC CAGGCTGGCT TCAAACTCAG AAATTTGCCT GCCTCTGCCT
  CCCGAGTGCT GGGATTAAAG GCGTGTGCCA CCACGCCCAT CGTGAGACTC TGTCTTAAAA
  ACATGGGTTT TTTGTTTTTT TTTTTTTTTT TGGTTTTTTT AATATTCTTT TTTAATGGAA
  W
  GAACAAAGTT TTAGAATCTA ATTGGATTTT CATAATCCCA GCCTTCTGAA AAGTAGAAGC
  AGAAGTCTTT CTGTTTATCA ATTAATTCAT TTATTTTGGT TTTTCAAGAC AGGGTTTCTC
  TGTGTAATGT TGGCTGACTT GGAACTCACT CTGTAGACTA GGCTGGCCTC AAACTCAGAG
  TGTGCTGGGA TTAAAGGTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47263702	NES11575249	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33160298					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47263702	NES11575249	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127189362 () rs orientation: forward

Symbol	Name	Function Class
Cfap119	cilia and flagella associated protein 119	1543 bp upstream
Cpgi19755	CpG island 19755	924 bp distal
Gm44759	predicted gene 44759	226 bp downstream
Rnf40	ring finger protein 40	within coordinates
Rr400653	regulatory region 400653	1471 bp downstream
Rr655845	regulatory region 655845	1261 bp distal
Tssr69263	transcription start site region 69263	1465 bp downstream
Tssr69264	transcription start site region 69264	1399 bp downstream
Tssr75013	transcription start site region 75013	2000 bp upstream
Tssr75014	transcription start site region 75014	1972 bp upstream
Tssr75015	transcription start site region 75015	1940 bp upstream
Tssr75016	transcription start site region 75016	1912 bp upstream