rs33160315 SNP Detail

Summary

• ID
  rs33160315
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152649879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGGAAGA TAAAAGAATT
  ACACTCTGAT AAATGGATCC TAGGCTGTAA TGTGCAAGTG TGTATGTGTG TGTAAGTGAG
  TGTAAATGTG GGTAAAGCCA AAATAACTAG GATGGAGATC AAGCGGAGAT AATATAGGTG
  GTAAGGAAGA ACAGTGGTGG GCAAAAGAAC ACATGAGACG TGAAAAAAGA AGCAACTGGG
  R
  AGGAAGGTTA GACAAGGGAA GGAGAATCTA CTATAACCCA TTGTTTGAGA TGCCGTAACG
  ATACCTAGTG TTGTGTGCTA ACTAAAAAAA AAAAGTTGGG GCTGGTGAGA TGGCTCAGTG
  GGTAAGAGCA CCCGACTGCT CTTCCGAAGG TCCGAAGTTC AAATCCCAGC AACCACATGG
  TGGCTCACAA CCATCCGTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45244323	mCV27575685	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss147974801	ENSMUSSNP6097535	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs33160315					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152649879 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A630035D09Rik	RIKEN cDNA A630035D09 gene			within coordinates
Bcl2l1	BCL2-like 1			Intron
				Noncoding-Transcript-Variant
Rr374093	regulatory region 374093			954 bp upstream
Rr567477	regulatory region 567477			1332 bp distal
Rr567478	regulatory region 567478			138 bp proximal
Tssr26861	transcription start site region 26861			1859 bp upstream