rs33160342 SNP Detail

Summary

• ID
  rs33160342
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:39598932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACTCTTG AGCATCACTC
  TGAAACCTGT TCTAAAACCA GCCTAAAACT CTTCCAATGC TCGTGTGCAG AACATGATCA
  ACCTATACTG ACCTCAGTTC ACTAAATGCC CTCGTGCTGA TCGTTTATAC ACACTGACAG
  AATTTAGCCA GGCGTGCCTC GGGGAACTGT TATTATTGTG GTACTCATTT TATTTCCTCA
  W
  CAGAGGTATC AAGAATTCAA TCTACTAAAA AGTACCATAT ACATAGTAAA ATATTAAAAA
  AAGAAGCTAA TACAGTACTC TGCAACTTGA TTCTAAAATA TGTAAAGTAT AATTGACATT
  TATTAGACTT TTTTTTTTAA AGAAAAACAT CTAAGTTCTA TACATAAAAC AAGCCCTTTT
  GCTAATCAGC AGTTCTTTTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47264162	NES11019194	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33160342					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47264162	NES11019194	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:39598932 () rs orientation: forward

Symbol	Name	Function Class
Rnf149	ring finger protein 149	within coordinates
Rr409900	regulatory region 409900	536 bp distal
Tssr11388	transcription start site region 11388	1526 bp upstream
Tssr11389	transcription start site region 11389	1471 bp upstream
Tssr11390	transcription start site region 11390	908 bp upstream
Tssr11391	transcription start site region 11391	878 bp upstream