rs33160989 SNP Detail

Summary

• ID
  rs33160989
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88132213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTAGGGCCT TGTGCCTAAT TTCTATTCAT TCATTCACTC
  ACTTATTTAT CTATTATTTA TGTGTGTGTG TGTATGTGTG TGTGTGTGTG TGTGTGCGCG
  Y
  GTGCGCGAGC AACCCCAGGA CCTTGTGCCG GCAAGGCAAG CACTCTACTC TTGAGCTATA
  ACCTAGTTTC TTTGAGGTAT TATCAATAAC ACCACTACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39501489	mCV23140482	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss146186040	ENSMUSSNP6230405	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss325500228	CHEV_17_88224125	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33160989					SNP	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88132213 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9633	CpG island 9633	1522 bp proximal
Gm50039	predicted gene, 50039	288 bp upstream
Rr393080	regulatory region 393080	905 bp downstream
Rr532768	regulatory region 532768	1403 bp proximal
Tssr146214	transcription start site region 146214	1132 bp upstream