rs33161034 SNP Detail

Summary

• ID
  rs33161034
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127189653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTTTGGT TTTTCAAGAC
  AGGGTTTCTC TGTGTAATGT TGGCTGACTT GGAACTCACT CTGTAGACTA GGCTGGCCTC
  AAACTCAGAG TGTGCTGGGA TTAAAGGTGT GCGCCACCAC CACCCGGCAG CCATGGAATA
  CCAAGCAGCT TATTCTGGGA CTTGGTAGAG GTTGATGGTC CCTGCTGTGG CCTTTCATTC
  Y
  GATGAGGATT CTCTGTCCCT TCCAGAACCG CTGCCAGTGC AGTTTCGAGC CCCTCTCAGT
  GAGCCGGCCT TGGCTTTTGT GGTGGCACTG GGCGCCAGCA GCTGTGAGGA AGTGGAGCTG
  CAGCTGCAGG GTCGGATGGA ATTCTCCAAG GCTGCCGTGT CTCGGGTGGT CGAGGCCTCG
  GACCGCCTGC AACGGCAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47263708	NES11575214	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33161034					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47263708	NES11575214	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127189653 () rs orientation: forward

Symbol	Name	Function Class
Cfap119	cilia and flagella associated protein 119	1834 bp upstream
Cpgi19755	CpG island 19755	1215 bp distal
Gm44759	predicted gene 44759	within coordinates
Rnf40	ring finger protein 40	within coordinates
Rr400653	regulatory region 400653	1762 bp downstream
Rr655845	regulatory region 655845	1552 bp distal
Tssr69263	transcription start site region 69263	1756 bp downstream
Tssr69264	transcription start site region 69264	1690 bp downstream