rs33161069 SNP Detail

Summary

• ID
  rs33161069
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103591586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGTG CTCAGAAGGG AGGGGACCAC
  W
  ACAGCTATGG GACCTTCCAT GGCTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45244238	mCV24889858	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33161069					SNP	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103591586 () rs orientation: forward

Symbol	Name	Function Class
Caprin1	cell cycle associated protein 1	1706 bp downstream
Cpgi11984	CpG island 11984	within coordinates
Gm75186	predicted gene, 75186	145 bp upstream
Nat10	N-acetyltransferase 10	within coordinates
Rr55318	regulatory region 55318	within coordinates
Rr367263	regulatory region 367263	within coordinates
Tssr19170	transcription start site region 19170	172 bp upstream
Tssr19171	transcription start site region 19171	236 bp upstream
Tssr25490	transcription start site region 25490	300 bp upstream
Tssr25491	transcription start site region 25491	151 bp upstream
Tssr25492	transcription start site region 25492	69 bp upstream
Tssr25493	transcription start site region 25493	within coordinates