rs33161075 SNP Detail

Summary

• ID
  rs33161075
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:39599000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTATTATTG TGGTACTCAT TTTATTTCCT CATCAGAGGT
  ATCAAGAATT CAATCTACTA AAAAGTACCA TATACATAGT AAAATATTAA AAAAAGAAGC
  W
  AATACAGTAC TCTGCAACTT GATTCTAAAA TATGTAAAGT ATAATTGACA TTTATTAGAC
  TTTTTTTTTT AAAGAAAAAC ATCTAAGTTC TATACATAAA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss47264165	NES11019195	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs33161075					SNP	T	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47264165	NES11019195	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:39599000 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rnf149	ring finger protein 149			Intron
				Noncoding-Transcript-Variant
Rr409900	regulatory region 409900			604 bp distal
Tssr11388	transcription start site region 11388			1594 bp upstream
Tssr11389	transcription start site region 11389			1539 bp upstream
Tssr11390	transcription start site region 11390			976 bp upstream
Tssr11391	transcription start site region 11391			946 bp upstream