rs33162175 SNP Detail

Summary

• ID
  rs33162175
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:101456913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGACAATG GTAAAAGTGT
  TGAGATGATG ATGATCTGTT TTCATAATTT AGGATTTATG TTTTGCTTAT GTTAGCAACA
  TTCAATAGAC AAGTATGGAA TGATGATCCT TGGATTGTAA GAGTCCCATC ACCAGAGAGT
  AAACTTCCCA TTGAGCTCTT GCGTTTGTAT TTACCTCTTC TTTCTGTACC CTATCCATCC
  K
  AATAGTTTCC CCCTTTCTAC CTGAATTTTA AGGGTTTGTA GATTCTCCTT TTTCAGTGAA
  TTAATCCAAA TAGGAATTAA TTATTGTCCA TATTAGTTAT GCTTGAATTA TTTGTAGATT
  GTCTTGAGGT TGCACCTTAG TAGAAGATGA TTTGAGTATT GTGTAAGAAG TCTTTCATTT
  GATGTCATAC ATTATAACTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49451037	NES12810042	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	T	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33162175					SNP	G	G	G	G	G	G	T	G	G	T	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49451037	NES12810042	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:101456913 () rs orientation: forward

Symbol	Name	Function Class
Gm57575	predicted gene, 57575	1048 bp downstream
Gm70454	predicted gene, 70454	541 bp upstream