rs33162957 SNP Detail

Summary

• ID
  rs33162957
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:28908336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAA CAGTAAAGTC TGGAAGCAAA
  K
  GGGGCCCTGA GCTGCGGCCT GATGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39501312	mCV22893283	ABI	CRAMUS_MOUSE	f	SNP	T	G	G
ss145423324	ENSMUSSNP6580541	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33162957					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28908336 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mapk14	mitogen-activated protein kinase 14			1980 bp upstream
Rr370201	regulatory region 370201			1764 bp upstream
Rr524631	regulatory region 524631			91 bp proximal
Rr524632	regulatory region 524632			423 bp proximal
Rr524633	regulatory region 524633			1477 bp proximal
Slc26a8	solute carrier family 26, member 8			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Tssr143452	transcription start site region 143452			1966 bp upstream
Tssr147147	transcription start site region 147147			396 bp downstream
Tssr147148	transcription start site region 147148			406 bp downstream
Tssr147149	transcription start site region 147149			421 bp downstream
Tssr147150	transcription start site region 147150			1783 bp downstream
Tssr147151	transcription start site region 147151			1857 bp downstream