rs33164994 SNP Detail

Summary

• ID
  rs33164994
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:98305048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGGTAAACT AACTGACTAG
  TGTGCTGTGT GCTCAGCAAA CCAGCTCAGA GTAAAGGTCG AGAGACCAGG AGATGGCCAA
  AGTGGTCAGG GGAAGAAGGA GTGGCTAGAG CTGTGTCCTC CCTGATGAAT AGCAGAGACC
  TGGAGCAACC TCTGTCCAGA ACATAAGGAT CCACTCTCAG CTCAGCAACA GACCAGGGCT
  Y
  ACTGTCCCTA CTGTGTGTCA AGCACTACAT GAGACTTTGG CATAAACCAT CTCAGGAGGT
  TCATCTCAGG GCACAAAGGG AAGTGGCTGG AGAGGATGAA GGACTTTGGA CTTGTTGGGG
  AGTGGATGGT GGAAGAAACG TTTGCTTAGC TTTCAAGCCT CCAGAGACCC AAACCTCCAT
  TCCAGTGAAT CAGGATGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	KK/HlJ	LG/J	NZW/LacJ	SM/J
ss47764624	NES11272960	PERLEGEN	MM_PANEL2	f	SNP	T		C
ss323129371	CHEV_9_98323414	CHEVERUD	SCREENING_POP	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	KK/HlJ	LG/J	NZW/LacJ	SM/J
rs33164994					SNP	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47764624	NES11272960	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:98305048 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22178	CpG island 22178	1669 bp proximal
D9Mit33	DNA segment, Chr 9, Massachusetts Institute of Technology 33	431 bp proximal
Rbp1	retinol binding protein 1, cellular	within coordinates
Rr685255	regulatory region 685255	633 bp distal
Rr685256	regulatory region 685256	24 bp distal
Rr685257	regulatory region 685257	within coordinates
Tssr86646	transcription start site region 86646	1784 bp upstream
Tssr86647	transcription start site region 86647	1867 bp upstream
Tssr86648	transcription start site region 86648	1927 bp upstream
Tssr86649	transcription start site region 86649	1964 bp upstream