rs33166334 SNP Detail

Summary

• ID
  rs33166334
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88373640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGACACCG CCGGAGCCTC
  TCCGCTCAAG CCCTGTCGGT CCCTCCCCGC CGCGGGGCTG GCCGGGGGGC GCGGGGGGAG
  GGCCGCGAGC CGGCGGGGGA GGGGCGGGGG CGGGGACAGA GGGGGCGTGG ATTCCGGCGG
  GGCCTGACCA ATGGGAAGCG CCCGTACGGT GTCGGAGCCA ATGGAGCCTC CTCTCTTATC
  R
  CGGAGCCCCC TTCCTCCAAC ACCCTGTTTC CTCTCTCGGG TTTCCTCCTT CCCCGACGGA
  GGAGGAGGAG GAGGAAAGAG GAAAGGGGGG AGTGTGGCAG GGCGGGTGAT AATGGGGAGG
  TATCAGGGCA TATAATGGAG CCGGGGGTGG GCGAAGGAGC GGCAGTACGT AGCGAAGGTT
  CTAGGATAGG AGGTGCTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39502820	mCV23140494	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G	G
ss146187231	ENSMUSSNP584060	ENSEMBL	ENSEMBL_Sanger	f	SNP			G		G
ss325500671	CHEV_17_88465552	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33166334					SNP	A	G	G	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88373640 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9636	CpG island 9636	within coordinates
Fbxo11	F-box protein 11	921 bp upstream
Rr333911	regulatory region 333911	1361 bp proximal
Rr340317	regulatory region 340317	within coordinates
Rr370332	regulatory region 370332	266 bp upstream
Rr405528	regulatory region 405528	within coordinates
Tssr146222	transcription start site region 146222	1411 bp downstream
Tssr146223	transcription start site region 146223	1383 bp downstream
Tssr149795	transcription start site region 149795	483 bp upstream
Tssr149796	transcription start site region 149796	381 bp upstream
Tssr149797	transcription start site region 149797	339 bp upstream
Tssr149798	transcription start site region 149798	219 bp upstream
Tssr149799	transcription start site region 149799	125 bp upstream