rs33167488 SNP Detail

Summary

• ID
  rs33167488
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124047581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCA AGGGAAAGGG GGTTTATGTA
  W
  ATACCTGAGT GTATATGTGT GTGCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45745703	mCV24596787	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A	A
ss149200149	ENSMUSSNP5613152	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		A
ss321672049	CHEV_5_124359527	CHEVERUD	SCREENING_POP	f	SNP						T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33167488					SNP	T	T	T	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124047581 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16594	CpG island 16594	1644 bp distal
Denr	density-regulated protein	within coordinates
Rr124363	regulatory region 124363	780 bp distal
Tssr48812	transcription start site region 48812	1958 bp downstream
Tssr48813	transcription start site region 48813	1947 bp downstream
Tssr48814	transcription start site region 48814	1931 bp downstream
Tssr48815	transcription start site region 48815	1911 bp downstream
Tssr48816	transcription start site region 48816	1885 bp downstream
Tssr48817	transcription start site region 48817	1404 bp downstream
Tssr48818	transcription start site region 48818	1330 bp downstream
Tssr48819	transcription start site region 48819	410 bp downstream
Tssr48820	transcription start site region 48820	385 bp downstream
Tssr53283	transcription start site region 53283	975 bp downstream