rs33167848 SNP Detail

Summary

• ID
  rs33167848
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127404398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACA CACACCAGGT
  GGGCAGGGCT CAAACAGCCA GGCAGGGAAG AGATCTGCTG TCAGAGCTGG CTCAGAGGAG
  TCTTGTTATC TGGAAGGTCC TATTTGCAGG GCCACTCCCT TCTCCCCGAG TTGTGCTGCA
  GTTGCGTACA CATACACTTC ATGTGACTAC CCTACTCCAG GGCAGGACAC ACACTCCTCT
  R
  TGTATCGCCT CCATAGGACT GCTAGCTCTG TCCTTTATCC CATTTACCTT CTGCCTGCTC
  CCAAAGAACC CATAAACTGC ACAGCTGCCC ACCTGATATA AGAGTTCCTC CATTCCTTAC
  TGCCACAGAC CAGTCCCTGA CTCACCATCC CAGACATTCA GCTGTAGTTG TGGCCATGGC
  TGATGTTTCA CGGGTTCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47265241	NES11565466	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33167848					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47265241	NES11565466	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127404398 () rs orientation: forward

Symbol	Name	Function Class
Gm49388	predicted gene, 49388	1424 bp downstream
Hsd3b7	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	1425 bp downstream
Rr655900	regulatory region 655900	within coordinates
Stx1b	syntaxin 1B	within coordinates
Tssr75035	transcription start site region 75035	1400 bp downstream
Tssr75036	transcription start site region 75036	1733 bp downstream
Tssr75037	transcription start site region 75037	1791 bp downstream