rs33167850 SNP Detail

Summary

• ID
  rs33167850
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127404934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAATACC ATGATTTTCC
  ACCTGCCATG GGCAGCCCTT GACCTCTAAC CTCATTACTC CTACCATACC CCTCCAGGAG
  ACACTTATAT ACAAGTGGGA ATGGCCCTGG GGGGACACTA TGCTGTTTAT GTGCGCAGCC
  CCAGCACCTA TGTGTGGCTA CCTCTCTGGA ACTCCCCAGC CTCAGCATTC ATGAGTACAC
  R
  AGTCTGTGCT AGCTGTCCAA GGCTCAGCTC TACTGTCAGG CAGAAACAGA AAAGTATGAA
  TGTGGGTCTG TGTTTCCGCA TCAGACGGTC GCACACTTTC GATGGAGCAG TGGATGTGGC
  TTCTGTTTTG ACAGATGGAG AGGAAGCAAC TGAGCCTGAA GAAACAAACC TGAATGGGAG
  CATAGCCTTA AAGAAGGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47265244	NES11565467	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33167850					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47265244	NES11565467	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127404934 () rs orientation: forward

Symbol	Name	Function Class
Gm49388	predicted gene, 49388	1960 bp downstream
Hsd3b7	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	1961 bp downstream
Rr655900	regulatory region 655900	327 bp distal
Stx1b	syntaxin 1B	within coordinates
Tssr75035	transcription start site region 75035	864 bp downstream
Tssr75036	transcription start site region 75036	1197 bp downstream
Tssr75037	transcription start site region 75037	1255 bp downstream
Tssr75038	transcription start site region 75038	1483 bp downstream
Tssr75039	transcription start site region 75039	1537 bp downstream