rs33168125 SNP Detail

Summary

• ID
  rs33168125
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85434272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCT CCACAGGAAC TCAAAGTCTC
  K
  AGAGCAGGAC GCCTACCTAG CGCAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46242965	mCV24193646	ABI	CRAMUS_MOUSE	f	SNP	T	G	T
ss145392378	ENSMUSSNP4547837	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss322751408	CHEV_8_87231542	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33168125					SNP	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85434272 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20709	CpG island 20709	1693 bp distal
Cpgi20710	CpG island 20710	440 bp distal
Nfix	nuclear factor I/X	within coordinates
Rr178192	regulatory region 178192	1329 bp proximal
Rr187001	regulatory region 187001	within coordinates
Rr187002	regulatory region 187002	1128 bp proximal
Tssr78440	transcription start site region 78440	982 bp upstream
Tssr82121	transcription start site region 82121	1816 bp upstream
Tssr82122	transcription start site region 82122	1583 bp upstream
Tssr82123	transcription start site region 82123	1434 bp upstream
Tssr82124	transcription start site region 82124	1389 bp upstream
Tssr82125	transcription start site region 82125	1315 bp upstream
Tssr82126	transcription start site region 82126	1127 bp upstream
Tssr82127	transcription start site region 82127	862 bp downstream