rs33168443 SNP Detail

Summary

• ID
  rs33168443
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47039021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTAATTTC ATGTGTCGTG
  CCTGAATATG TGCATCATGT GCATACCTTG TGTCTGCAGA CCCCAGAGAG GGTGCTGGGC
  ACCAAATTTG GGTCCTCTGT AAGAACATGT GCCATCTCCC CAGCTGCCTC TTATTAGAAA
  CAGGGTCTCC TAATGTAGCC CTGCAGGGCC TGGAACTCAC AGAGAGCCAC CTATTTAGGA
  S
  TCCCTGAGTG CTGGGATTAA ATATATGTGC CACTACTCCT GACATCAACA CATTTTTTTT
  TATTTTTAAT TATGTCTGTA TGTGTAGTAC ATGTGAGTAC AGTGCCCTCC ACGGCCAGAA
  GGGAGCGCTA ACCTCCCCCT GGAACGGAAT TCCAGGCGAT TATGAGCCAC CTGATGCAGA
  TGCTAGGCAC TGAGAGCCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	MSM/Ms
ss39502602	mCV25217971	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	C
ss145701287	ENSMUSSNP5546473	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	MSM/Ms
rs33168443					SNP	G	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47039021 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9242	CpG island 9242	608 bp proximal
Cpgi9243	CpG island 9243	1653 bp proximal
Gm65860	predicted gene, 65860	952 bp upstream
Gnmt	glycine N-methyltransferase	within coordinates
Rr331606	regulatory region 331606	421 bp distal
Rr331607	regulatory region 331607	within coordinates
Rr339923	regulatory region 339923	179 bp proximal
Tssr148377	transcription start site region 148377	1772 bp upstream
Tssr148378	transcription start site region 148378	1753 bp upstream
Tssr148379	transcription start site region 148379	1740 bp upstream
Tssr148380	transcription start site region 148380	1377 bp upstream
Tssr148381	transcription start site region 148381	723 bp upstream
Tssr148382	transcription start site region 148382	1063 bp downstream