rs33168610 SNP Detail

Summary

• ID
  rs33168610
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121993539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTAATTT AAAAAGTCAA
  GTATGCAAAG AATAACATAT AGAATTGTTT ATAACTATTC TGTATATAAA TATTGACCTC
  GAGTCTCCCT TCTGATGGGC TCAAAGAAAC TCAATTTATA CTCTTTGAGA AGTGGCACCC
  ACAGAGAGTG TGATTATACA CACATATATG AGTACTCAGG TGGCAGTGTG TGTGTGTGCG
  Y
  GCGCGCTAAC ACAGAGGCTA GAAGAAGGAT GTCGATGTCC TGCTTTCGTT ACTTGTCTTG
  TCAAGATGGT GTAGCACACT GAAAATCATA CCCTCCTCCA CCACCATCAT TCTCTCCTAA
  ACACATATAC ATTCTCTCCT AACTCAAGGA GAATGAAAAA GACAGAAAAA AAAAAAACCC
  AAAAAAACCA CATGCATATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45244880	mCV24435069	ABI	CRAMUS_MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs33168610					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121993539 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Patl2	protein associated with topoisomerase II homolog 2 (yeast)			Intron
Rr373780	regulatory region 373780			431 bp downstream
Rr563920	regulatory region 563920			1147 bp distal
Rr563921	regulatory region 563921			522 bp proximal
Trim69	tripartite motif-containing 69			Intron
				Noncoding-Transcript-Variant
Tssr19832	transcription start site region 19832			1499 bp downstream