rs33169046 SNP Detail

Summary

• ID
  rs33169046
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127405911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCAACACA CACACACACA
  CACACACACA CACACACACA CACACAGAGA GAGAGAGAGA GATTGGGAGA GAGATTGAGA
  GAGAGAGAGA GAGTCCCCAG GACATGATGC GACCGACCCC TGGCAGTAAG CAAGTCAGGA
  GAGTTTGTTC TACATCACAT AAGATGTGCA GCATGGTCGC TGGGCCTCTC TGGATCCTCC
  R
  AGGATGTGAA TTCTCCTCCC ACTCCAGATG TAGCAGACAG GAGAGAAGGT CAGTGGAGGA
  ATTGCTTTTG CATTGGGTTT TCACACTCAC AAAATTCAAT GTACATACAC TGTATGGGCA
  CAGATCTACA CACACACACA CACACACACA CACACACACA CACACTATCC ATGTCTATTC
  ACACAGGACA GGTTGGGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47265250	NES11565221	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33169046					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47265250	NES11565221	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127405911 () rs orientation: forward

Symbol	Name	Function Class
Rr655900	regulatory region 655900	1304 bp distal
Stx1b	syntaxin 1B	within coordinates
Tssr75035	transcription start site region 75035	102 bp upstream
Tssr75036	transcription start site region 75036	220 bp downstream
Tssr75037	transcription start site region 75037	278 bp downstream
Tssr75038	transcription start site region 75038	506 bp downstream
Tssr75039	transcription start site region 75039	560 bp downstream