rs33169080 SNP Detail

Summary

• ID
  rs33169080
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:47987751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGG TGTACGCCTT TAATCCCAGT
  R
  TTAGGGTGGC AGAGGCAGGC TGATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46242478	mCV24782096	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss144805815	ENSMUSSNP4897102	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
ss322655772	CHEV_8_48620070	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33169080					SNP	A	G	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:47987751 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20329	CpG island 20329	462 bp distal
Gm63731	predicted gene, 63731	785 bp downstream
Rr186609	regulatory region 186609	within coordinates
Rr368533	regulatory region 368533	913 bp downstream
Rr400846	regulatory region 400846	1025 bp downstream
Rwdd4a	RWD domain containing 4A	within coordinates
Trappc11	trafficking protein particle complex 11	1246 bp upstream
Tssr77336	transcription start site region 77336	1007 bp downstream
Tssr81236	transcription start site region 81236	1304 bp upstream
Tssr81237	transcription start site region 81237	1280 bp upstream
Tssr81238	transcription start site region 81238	1239 bp upstream