rs33169581 SNP Detail

Summary

• ID
  rs33169581
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:83474287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAAA GTCATTATGG AATTTACCAA
  R
  CACTTAAACT AACCTTAAAT TGGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45245622	mCV23818105	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss146812150	ENSMUSSNP2409697	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss320367674	CHEV_2_83484100	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33169581					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:83474287 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11854	CpG island 11854	169 bp proximal
Rr57102	regulatory region 57102	within coordinates
Rr397083	regulatory region 397083	333 bp upstream
Tssr18640	transcription start site region 18640	534 bp upstream
Tssr18641	transcription start site region 18641	558 bp upstream
Tssr18642	transcription start site region 18642	581 bp upstream
Tssr18643	transcription start site region 18643	621 bp upstream
Tssr18644	transcription start site region 18644	638 bp upstream
Zc3h15	zinc finger CCCH-type containing 15	635 bp upstream