rs33169814 SNP Detail

Summary

• ID
  rs33169814
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127407193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCATTGTG CCTTGTCTCG ATCTCATTCA GAGCTTGCTT
  TGTCATCTGC GAGTCCATTT TGATCTGAGG TGACGGGAGG AAGAGAGGGC AGTGATCACC
  Y
  TTTGGCCGTG TAATAGCTTC AGTTCAACAG AGGGTTTGGG TTCAAATCCT TGTGTAGTGA
  TAATTCAGGA ATTTGGTTTC TTTAAAAACA AAAACAAAAA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47265259	NES11565186	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33169814					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47265259	NES11565186	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127407193 () rs orientation: forward

Symbol	Name	Function Class
Stx1b	syntaxin 1B	within coordinates
Tssr75035	transcription start site region 75035	1384 bp upstream
Tssr75036	transcription start site region 75036	1029 bp upstream
Tssr75037	transcription start site region 75037	987 bp upstream
Tssr75038	transcription start site region 75038	753 bp upstream
Tssr75039	transcription start site region 75039	691 bp upstream