rs33169825 SNP Detail

Summary

• ID
  rs33169825
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26730245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCA TTGAGATAAA CAGCTTAGGA
  R
  GGGAAATGGA GGCCGGCTGG TGTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39502810	mCV22899502	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	G
ss145404968	ENSMUSSNP2022914	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
ss325342199	CHEV_17_26648216	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33169825					SNP	A	A	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26730245 () rs orientation: forward

Symbol	Name	Function Class
Gm56886	predicted gene, 56886	1278 bp downstream
Rr339410	regulatory region 339410	1444 bp distal
Rr392454	regulatory region 392454	within coordinates
Rr406958	regulatory region 406958	581 bp distal
Tssr5045	transcription start site region 5045	1803 bp upstream
Tssr5046	transcription start site region 5046	1750 bp upstream
Tssr5047	transcription start site region 5047	1739 bp upstream
Tssr143235	transcription start site region 143235	1563 bp downstream
Tssr143236	transcription start site region 143236	1530 bp downstream
Tssr143237	transcription start site region 143237	1456 bp upstream
Tssr146956	transcription start site region 146956	1772 bp upstream
Tssr146957	transcription start site region 146957	1702 bp upstream