rs33170336 SNP Detail

Summary

• ID
  rs33170336
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:105504000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGG CCAGTGTTTC CTTCTAGCTC
  S
  GATCCAGTGC CTTAGGTCCT CCAGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45245371	mCV27580896	ABI	CRAMUS_MOUSE	f	SNP	G	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33170336					SNP	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:105504000 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12019	CpG island 12019	1064 bp distal
Cpgi12020	CpG island 12020	942 bp proximal
Pax6	paired box 6	within coordinates
Rr370602	regulatory region 370602	within coordinates
Rr562271	regulatory region 562271	1785 bp distal
Rr562272	regulatory region 562272	within coordinates
Rr562273	regulatory region 562273	1046 bp proximal
Rr562274	regulatory region 562274	1983 bp proximal
Tssr19252	transcription start site region 19252	751 bp upstream
Tssr19253	transcription start site region 19253	771 bp upstream
Tssr19254	transcription start site region 19254	888 bp upstream
Tssr19255	transcription start site region 19255	1774 bp upstream
Tssr19256	transcription start site region 19256	1823 bp upstream
Tssr19257	transcription start site region 19257	1960 bp upstream
Tssr19258	transcription start site region 19258	1981 bp upstream
Tssr25564	transcription start site region 25564	323 bp downstream
Tssr25565	transcription start site region 25565	1626 bp downstream