rs33170619 SNP Detail

Summary

• ID
  rs33170619
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127439011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTGTCTTC AGGGGACCAA
  ACCAGGCAGA CTGGGCTTCT GAAGAAACGC AGCAACACTG CATTCCCTGA GTGGGGTGGT
  CAGCGTCAGA GGATCCTCAC TCCCTCCTTC CCAGTTCTAG GCGAGCTATA CTCTAAAGGG
  GAAAGGACCA ACGCCCCATG CATGGGGTCA GGCTGCATGT GACAATTTCC AGCCTTTTAT
  Y
  TAAAAGATTT AAAGATTTAT TTATTTATTA TATGCAATTA CACTGTAGCT ATCTTCAGAC
  ACCCCAGAAG AGGGTGTCAG ATCTCATTAC AGATGATTGT GAGCTACCAT GTGGTTGTTG
  GGATTTGAAC TCAGGACCTC AGGAAGAGCA GTTAGTGCTC TTAACCATTG AGCCATCTCT
  CCAGCCCTAA AGATTTTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47265529	NES11563533	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33170619					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47265529	NES11563533	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127439011 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19771	CpG island 19771	1066 bp proximal
Gm72953	predicted gene, 72953	within coordinates
Rr153805	regulatory region 153805	1411 bp distal
Rr153806	regulatory region 153806	within coordinates
Rr163662	regulatory region 163662	1645 bp distal
Rr166763	regulatory region 166763	789 bp proximal
Rr400656	regulatory region 400656	1576 bp upstream
Stx4a	syntaxin 4A (placental)	821 bp upstream
Tssr69296	transcription start site region 69296	1158 bp upstream
Tssr69297	transcription start site region 69297	1861 bp upstream
Tssr69298	transcription start site region 69298	1913 bp upstream
Tssr69299	transcription start site region 69299	1978 bp upstream
Tssr75044	transcription start site region 75044	1634 bp downstream