rs33171199 SNP Detail

Summary

• ID
  rs33171199
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:105278022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTCTACC TGGGGAAGGT
  TGAGCAGTCC TTGGCAGACC TAAAAAATTC CTCCCCCACC CCATCAAAAA CCCCCCAGCA
  AGTACCTGGG ATTCCTGGAC TGCCTCTCCA TGCAAATGCA ACAATCAAAG CAATTTAAAC
  CCTAGCCAAT GATTTTCATT TGCTCTGAAA CTCATTCTAA TTCTCCAAGG TCCATATATA
  M
  CCCCTGGTTC ACCCTGAATA AAGTGTATGC TTTCCACCCC ATCCCCAACT CCAAATAAAG
  CCATGTGTAC AAGCTAAAAT TGCCTAAGAA GTATTCCATC AAAGACCATC AGAGAAGGCC
  TTCATCTAAA AGAGCTCTAA CACTAAGATC CTTGGAGAAG GCCTTCTCTT CCCATGCCCT
  CACTCCCAGC CAGACCAGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45746291	mCV23374774	ABI	CRAMUS_MOUSE	f	SNP	A	C	A	A
ss148988978	ENSMUSSNP4683845	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33171199					SNP	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:105278022 () rs orientation: forward

Symbol	Name	Function Class
Gbp4	guanylate binding protein 4	Intron
Tssr1571	transcription start site region 1571	1616 bp downstream
Tssr52267	transcription start site region 52267	1171 bp downstream
Tssr52268	transcription start site region 52268	1216 bp downstream
Tssr52269	transcription start site region 52269	1278 bp downstream
Tssr52270	transcription start site region 52270	1459 bp downstream
Tssr52271	transcription start site region 52271	1582 bp downstream
Tssr52272	transcription start site region 52272	1641 bp downstream
Tssr52273	transcription start site region 52273	1711 bp downstream
Tssr52274	transcription start site region 52274	1739 bp downstream
Tssr52275	transcription start site region 52275	1759 bp downstream
Tssr52276	transcription start site region 52276	1788 bp downstream
Tssr52277	transcription start site region 52277	1818 bp downstream
Tssr52278	transcription start site region 52278	1840 bp downstream
Tssr52279	transcription start site region 52279	1906 bp downstream
Tssr52280	transcription start site region 52280	1955 bp downstream
Tssr52281	transcription start site region 52281	1985 bp downstream