rs33171425 SNP Detail

Summary

• ID
  rs33171425
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127440058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGGTCTA CAGAGTGAGT
  TCCAGGACAG CTAGGGCTAC ACAGAGAAAC CCTGTCTCGA AAAACAAACA AACAAACAAA
  CAAACAAACA AACAAATCTG GGGAAATGGC ACCGTGAGAG AAGCGTAAAG AAGATCAGGA
  AGCCACGGGC TTTAGTTTCA AATACAGGAA AGGCTACTAT TCGGATCAAA TCTTCTATGC
  R
  GGACTGCTAT GTGGCAGCTA CCGAATTTGG TGTTGGGGAT TCCGTTAAAG AAAAGCAAGT
  CATGCTGAGA CGTCAGCTGT AAGGCAGGGC TGCGGAGGTA ACAGTACATT TTTCTCAGTC
  TGAGCTGCTC TGGAATTGTC GTGCTGCTCA GAAGGTAGCG AGCTCAGCGG GACTGCAATG
  CTCACTCGGG GCATAGGCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47265535	NES11563412	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33171425					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47265535	NES11563412	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127440058 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19771	CpG island 19771	19 bp proximal
Gm72953	predicted gene, 72953	within coordinates
Rr153806	regulatory region 153806	658 bp distal
Rr166763	regulatory region 166763	within coordinates
Rr400656	regulatory region 400656	529 bp upstream
Stx4a	syntaxin 4A (placental)	within coordinates
Tssr69296	transcription start site region 69296	111 bp upstream
Tssr69297	transcription start site region 69297	814 bp upstream
Tssr69298	transcription start site region 69298	866 bp upstream
Tssr69299	transcription start site region 69299	931 bp upstream
Tssr69300	transcription start site region 69300	971 bp upstream
Tssr69301	transcription start site region 69301	980 bp upstream
Tssr69302	transcription start site region 69302	1018 bp upstream
Tssr69303	transcription start site region 69303	1061 bp upstream
Tssr75044	transcription start site region 75044	587 bp downstream
Tssr75045	transcription start site region 75045	1579 bp downstream