rs33171856 SNP Detail

Summary

• ID
  rs33171856
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155555053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTTGTGA AGATGATAAA
  AGCCAGGGAG GAAGTGGCAG CTCCCTCTGA GAAAACCAAC TCTCTGCCTG AGGCCTTGGA
  GCCAGAGACC ACTGGAGGGC CCCAGGAGCC AGGCCCCAGT GCCCAGCGGC CCTAGTCAAG
  CCCGCTTGAA AAGGGTGGGA GTTCTCTCTT CTGGAGCCAT TAAACCATTG CCTGGATTCC
  Y
  GGCACTTAGG ACCAAGGAGC CCCACCTGTG TCATCCTTCC CCTGGGAAGG CCAGCCATCC
  AGCACATTGC TGCGGACGCG GCCTCGTTGC TATGCAATGC CTGGCCAGCC AGCCTGCCCC
  TGTATTGGCC CCTCTTCTTC ACCCTTCCCA TCCATCCGGG GCCCAGCAGG CCCTCATCCC
  GGAGGAGCCT GGATCTTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46780744	NES10992612	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33171856					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46780744	NES10992612	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155555053 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15469	CpG island 15469	948 bp distal
Gm55744	predicted gene, 55744	529 bp downstream
Gm69352	predicted gene, 69352	957 bp upstream
Gm70003	predicted gene, 70003	1232 bp downstream
Rr606482	regulatory region 606482	1455 bp distal
Rr606483	regulatory region 606483	713 bp distal
Tmem52	transmembrane protein 52	mRNA-UTR
Tssr40643	transcription start site region 40643	1454 bp downstream