ACAAA AACCCCCATG CTGGGTTAAA K AATTCATTTT GTTTAATAGA TAATT K = G/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129X1/SvJ |
A/J |
C57BL/6J |
DBA/2J |
LG/J |
SM/J |
---|---|---|---|---|---|---|---|---|---|---|---|
ss39503093 | mCV22900304 | ABI | CRAMUS_MOUSE | f | SNP | G | G | T | G | ||
ss145405413 | ENSMUSSNP3968006 | ENSEMBL | ENSEMBL_Sanger | f | SNP | G | G | ||||
ss325342278 | CHEV_17_26673566 | CHEVERUD | SCREENING_POP | f | SNP | T | G | ||||
SNP Consensus Information | |||||||||||
SNP | Consensus Type | 129X1/SvJ |
A/J |
C57BL/6J |
DBA/2J |
LG/J |
SM/J |
||||
rs33172136 | SNP | G | G | T | G | T | G |
Location: Chr17:26755595 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm34606 | predicted gene, 34606 | 257 bp downstream | ||||||
Gm50275 | predicted gene, 50275 | within coordinates | ||||||
Gm64855 | predicted gene, 64855 | 862 bp downstream | ||||||
Rr405114 | regulatory region 405114 | 1429 bp upstream | ||||||
Rr523871 | regulatory region 523871 | 1577 bp distal | ||||||
Rr523872 | regulatory region 523872 | 1278 bp distal | ||||||
Rr523873 | regulatory region 523873 | 495 bp distal | ||||||
Rr523874 | regulatory region 523874 | 1171 bp proximal | ||||||
Rr523875 | regulatory region 523875 | 1609 bp proximal | ||||||
Tssr5048 | transcription start site region 5048 | 1264 bp downstream | ||||||
Tssr5049 | transcription start site region 5049 | 1213 bp upstream | ||||||
Tssr5050 | transcription start site region 5050 | 785 bp downstream | ||||||
Tssr143246 | transcription start site region 143246 | 1709 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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