rs33172183 SNP Detail

Summary

• ID
  rs33172183
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155551644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTCACCC TGCCCCAAAC
  CCTGGAAGAC CCCTCTAGAT CCGTATCACT GAGGGTAACA GTAGGCAGCG TAGGAAGCTG
  GGGGTTGCAG AGCCAGGGTT GAGCCTGGTT TAGACCTGGA AAGGTACAGG GGCGAGTAAG
  AGGGGGACAA GAGGTTCCAA AGTCCAGAAA GGTCCCTTAA GCCTCTCAAC TCCTCCCAAG
  Y
  CTCGGGAACC CAGATGCTCC CAAGCAAGGT GTGAGCCCGG TGTAAAGCGG GGCCCGGCCC
  GTGAGTCTGA GCTCAGAGTT CTCCGAAAAG GATGGATTTT GCTTTCTGCA CCCCATTCCA
  TCACCGCACG AGCTCTTCCC TCTGAAGTAC AGCTTGTTGA AAGCTTTCTC TCGGAGCACA
  TCCAGCCTGC CTGCCTGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46780657	NES10992839	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33172183					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46780657	NES10992839	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155551644 () rs orientation: forward

Symbol	Name	Function Class
C030017K20Rik	RIKEN cDNA C030017K20 gene	782 bp downstream
Cfap74	cilia and flagella associated protein 74	364 bp downstream
Cpgi15469	CpG island 15469	1851 bp proximal
Gm69352	predicted gene, 69352	within coordinates
Rr606482	regulatory region 606482	1777 bp proximal
Tmem52	transmembrane protein 52	1927 bp upstream
Tssr40642	transcription start site region 40642	583 bp downstream
Tssr40643	transcription start site region 40643	1936 bp upstream