rs33172189 SNP Detail

Summary

• ID
  rs33172189
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24306936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTCAATG CCTATATCTT
  TCCTGGTTTT TATGCTGAAA TAGCTGTGAA TGGCTGGCTT CTTTATTAAA ATGCATCTCT
  TTTCATATTT GTGTTCTTTT TGTGTAACCT TTTTGAGATC TACAGAATTG ATGATTTGAG
  ATTGCAAGTG TCTTTGATGT GTACCTCTAG TGGTAATTAA ATCGAACTCA CTGGTGCTTA
  R
  ATTTGTTTAA GCTCATTCTG GTATACTCCT ACTGTCCCGA ACTGTGGCAG ATGTGGGCTG
  GAGCTTTGCA AAGCATTACC TCATTCCTTA GATAGGCTGC AACAAAGTCA CAGCATCCAT
  CAGGTGTTAC AAGAAGATGG TCTGAACCAA CATGTTATTT AGTTCTTTGA TTTTAAAATT
  AATTCATATT TCTTAGACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45746302	mCV23730603	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33172189					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24306936 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15589	CpG island 15589	616 bp distal
Gm71592	predicted gene, 71592	1442 bp upstream
Klhl7	kelch-like 7	within coordinates
Rr377704	regulatory region 377704	772 bp upstream
Rr398996	regulatory region 398996	1206 bp downstream
Rr608239	regulatory region 608239	1458 bp distal
Rr608240	regulatory region 608240	1305 bp distal
Rr608241	regulatory region 608241	within coordinates
Rr608242	regulatory region 608242	227 bp distal
Tssr45399	transcription start site region 45399	1269 bp downstream
Tssr45400	transcription start site region 45400	1240 bp downstream
Tssr50303	transcription start site region 50303	1453 bp upstream