rs33172200 SNP Detail

Summary

• ID
  rs33172200
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130898340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGCA AGGATGTGTG AACAGGAAGC
  K
  CTCACCTCTG CCGCAGCCCC AGGCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss45245914	mCV22650673	ABI	CRAMUS_MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs33172200					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130898340 () rs orientation: forward

Symbol	Name	Function Class
Adam33	a disintegrin and metallopeptidase domain 33	within coordinates
Cpgi12279	CpG island 12279	786 bp distal
Rr565170	regulatory region 565170	1087 bp distal
Rr565171	regulatory region 565171	627 bp distal
Rr565172	regulatory region 565172	26 bp distal
Tssr26331	transcription start site region 26331	1867 bp upstream
Tssr26332	transcription start site region 26332	590 bp upstream
Tssr26333	transcription start site region 26333	145 bp downstream
Tssr26334	transcription start site region 26334	161 bp downstream