rs33172290 SNP Detail

Summary

• ID
  rs33172290
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127440790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGTCGGG GACGTCGCGA
  GACTGAAGCC CGAGACGTCG CTGACAGGCC GGAACACATG ACTGGCGGTC GGGCGTGCAG
  CCCGCGGAGC TGGGCCCGGC CTGTCACGTG ATGAGGGGGC GCCATGGGGT GATGTGAGAT
  ACGAGGCTCT CAGACTGCGT GCAAATGACG CATTCCCAAC CCTTTGGGCA ACTAGATCTC
  K
  GCTCCAATAT GAGATGTTCC GGTAGTGGGG GGGGGGGGAG CAGCGGGGCG GGCTCTGGAC
  TCAGGCAGCC TCGCTTCCGT TCGGCTGCCA CTGCTTCCGA CCTCCGCCTT TCCCTCTAGC
  GAGGACGAGC CGAGCCCTCG CGCGCATGCT CGGAGTCATC CCCCGAGGGG CGGGGCGGCA
  GCTGCGGGAG CAGGATGGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47265550	NES11563419	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33172290					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47265550	NES11563419	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127440790 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19771	CpG island 19771	within coordinates
Gm72953	predicted gene, 72953	within coordinates
Rr153806	regulatory region 153806	1390 bp distal
Rr166763	regulatory region 166763	within coordinates
Rr400656	regulatory region 400656	within coordinates
Stx4a	syntaxin 4A (placental)	within coordinates
Tssr69296	transcription start site region 69296	600 bp downstream
Tssr69297	transcription start site region 69297	82 bp upstream
Tssr69298	transcription start site region 69298	134 bp upstream
Tssr69299	transcription start site region 69299	199 bp upstream
Tssr69300	transcription start site region 69300	239 bp upstream
Tssr69301	transcription start site region 69301	248 bp upstream
Tssr69302	transcription start site region 69302	286 bp upstream
Tssr69303	transcription start site region 69303	329 bp upstream
Tssr75044	transcription start site region 75044	137 bp upstream
Tssr75045	transcription start site region 75045	847 bp downstream