rs33172478 SNP Detail

Summary

• ID
  rs33172478
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:127396468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCAAAAGA CGGCCCCAAG
  ATGGGCCCCG GGAGCATCAG ACAGGCTCTG CACGCAGCGA AGGTTATTAC CCCATTAGCA
  AGAAGGAGAA AGATAAATAC TTGGATGTGT GCCCCGTCTC GGCCCGGCAG CTGGAAGGTG
  GAGACACTCA GGTAGAGCCA TGTTCTGAGC CCTCCCTAGT TTGCTGCCTC CTTCCTGTCC
  Y
  TCACATGCCA CCTCCTTGTC TTGCTCACAG GGGACTAATC GGGTGCTTTC TGAGCGACGG
  TCAGAGCAGC GGCGGTTACT AAGCGCTATT GGCACCTCAG CCATCATGGA CAGTGATCTG
  CTAAAGCTAA ACCAGCTCAA GGTCAGGAGG GGAAACTGGA AGAGGGAGGA GACCCAGTGA
  AAAAAACTAC AGCAAGGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47265202	NES11565446	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33172478					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47265202	NES11565446	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127396468 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19768	CpG island 19768	1754 bp proximal
Gm49388	predicted gene, 49388	Intron
Rr655896	regulatory region 655896	826 bp distal
Setd1a	SET domain containing 1A	Intron