rs33172483 SNP Detail

Summary

• ID
  rs33172483
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127397669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTGGGTT GGCCTCAGTG
  GGACTTAATG GCAGATCCAA AGTATGGATA AGATAATGTC AGCAGAGGTG ACAGGAGTCT
  AGCCTGTGGG TTCAAAGTAA TTGACAGCCA GGTAGCCAAG CTATGAAGGG TGAAAACACG
  GTGCTGAGTC CTTTCTCAGG CCTTCGCCGT TAGCTTCTAG GAATGTGCTT GGGCAGAAGG
  R
  ACAGAGTGTG GTCAAGATTT GTTCAGTACA GACGTGAGGC TCAGGATCCT AGGGATGTAG
  GAATGGCATC CCACTCTCTT ATGGAGGTAG ATTTGGCTGG AGAGTGACGC CTGGAAGGAG
  TCCTCACTGC AGAGCTGGTG GTTAGAACTC TGCAAAGGGG GAGGTCACCT AGTGAGAGTG
  GCAATTGCAT TACCTATTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47265208	NES11565448	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33172483					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47265208	NES11565448	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127397669 () rs orientation: forward

Symbol	Name	Function Class
9430064I24Rik	RIKEN cDNA 9430064I24 gene	1597 bp downstream
Cpgi19768	CpG island 19768	553 bp proximal
Gm49388	predicted gene, 49388	within coordinates
Rr655897	regulatory region 655897	1617 bp proximal
Setd1a	SET domain containing 1A	within coordinates