rs33172880 SNP Detail

Summary

• ID
  rs33172880
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:21817238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCCAGGA AGACACCCAT
  GGACCAGAGT AAGCCAGGAC AAGATCTCCA CTTGTCTCAG AGCTGGAGGT AGCGGTATGC
  AGACACTCAG CTTCTTATAT AGGTGCTGGG ATACAAACCC TCACCCTGGT TGCTCAGCAA
  GAGCTGCTAA TCACTAAGCC ATCTCTTCAG CCCTAAATAG GTTAAAAACA GGTTTTTTTT
  K
  GGGGGGGGGT GTTGTTGTTG TTGTTCTCTA ACTGGATGCA TAGACTGGCA TTAATAAAAC
  CGCAGCATGT TGGGGCAGAC CTTTAATCCC AGTACTCGGA AGGAGGGGGC AGGCACTTTG
  AGTTCAAGGC CAACCTGGTC TACACAGTGG AACCTTGTCT CAAAAAAGTA AAGAAATGAA
  ATTTCAGGAG GGTGTGGTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45745670	mCV25102125	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	G
ss148010635	ENSMUSSNP4208592	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		G
ss321482479	CHEV_5_21118058	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33172880					SNP	T	T	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:21817238 () rs orientation: forward

Symbol	Name	Function Class
Fbxl13	F-box and leucine-rich repeat protein 13	within coordinates
Gm8539	predicted gene 8539	1754 bp downstream