rs33172994 SNP Detail

Summary

• ID
  rs33172994
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119574656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAAAAGAGG GTGGGGGACT CACAGCAAGG ATGTCGTCCC
  CCCACTTCCC GTCATCAGGT GTAGGTGCGG GGGCTCAGTC ACGAGTCCTC TGTGCCTTTC
  R
  TCCTGACACC GTACGATCCG GTACGGTGGT CGTTCTTGGG GCGACTCTAG ACTAGGTACT
  GAGGCGAATG TCGCCGAGGC CGAGGCTTCC CCAATACTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45246300	mCV22556927	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss147341093	ENSMUSSNP254586	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
ss320477113	CHEV_2_119569911	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33172994					SNP	G	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119574656 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12126	CpG island 12126	within coordinates
Gm75736	predicted gene, 75736	980 bp upstream
Itpka	inositol 1,4,5-trisphosphate 3-kinase A	Intron
Rr563568	regulatory region 563568	1828 bp distal
Rr563571	regulatory region 563571	490 bp distal
Rr563572	regulatory region 563572	937 bp distal
Rr563573	regulatory region 563573	343 bp proximal
Rr563574	regulatory region 563574	511 bp proximal
Rr563575	regulatory region 563575	886 bp proximal
Tssr19656	transcription start site region 19656	1870 bp downstream
Tssr19657	transcription start site region 19657	1844 bp downstream
Tssr19658	transcription start site region 19658	1820 bp downstream
Tssr25827	transcription start site region 25827	970 bp upstream