rs33173069 SNP Detail

Summary

• ID
  rs33173069
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155551728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCAGAGCC AGGGTTGAGC
  CTGGTTTAGA CCTGGAAAGG TACAGGGGCG AGTAAGAGGG GGACAAGAGG TTCCAAAGTC
  CAGAAAGGTC CCTTAAGCCT CTCAACTCCT CCCAAGTCTC GGGAACCCAG ATGCTCCCAA
  GCAAGGTGTG AGCCCGGTGT AAAGCGGGGC CCGGCCCGTG AGTCTGAGCT CAGAGTTCTC
  Y
  GAAAAGGATG GATTTTGCTT TCTGCACCCC ATTCCATCAC CGCACGAGCT CTTCCCTCTG
  AAGTACAGCT TGTTGAAAGC TTTCTCTCGG AGCACATCCA GCCTGCCTGC CTGCCTGCCT
  GCCTTGCCTG CCTGTGCAGC ATACGAACTT TGCCACCCAG TGGGGACAAG CTACTGAGAG
  AGCCTTCCCA GCCCTCCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46780663	NES10992841	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33173069					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46780663	NES10992841	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155551728 () rs orientation: forward

Symbol	Name	Function Class
C030017K20Rik	RIKEN cDNA C030017K20 gene	866 bp downstream
Cfap74	cilia and flagella associated protein 74	448 bp downstream
Cpgi15469	CpG island 15469	1767 bp proximal
Gm69352	predicted gene, 69352	within coordinates
Rr606482	regulatory region 606482	1693 bp proximal
Tmem52	transmembrane protein 52	1843 bp upstream
Tssr40642	transcription start site region 40642	667 bp downstream
Tssr40643	transcription start site region 40643	1852 bp upstream