rs33173159 SNP Detail

Summary

• ID
  rs33173159
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127441388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTCCAGGG CACTCCGACC
  ACCATGCGCG ACAGGACCCA CGAGTTGAGG CAGGTGAGAA ACCGGGATGG TGAGGACACC
  CTGGAGTGAG GAGAAGCGGG GCCGGGCGGG CGCGCTGGAG TGAGGACTCC TGGTTTTGGG
  TCCCGGGCGG GTGGCTGATG GCCAGGAAGG AAAATCCCGG AAGCCCATGG TTCCTGCGGG
  R
  CGAGAACCGC AGCGAGCAAC TGTCGCCAAT GACTCCGGCC CTGGCAGGGG GATAACATCT
  CAGACGATGA AGATGAGGTT CGAGTCGCGC TGGTGGTGCA CTCAGGTGCT GCCCGGTTGG
  GCAGCCCGGA CGACGAGTTC TTCCAGAAGG TAAGGGTCAG GAGAACCGAG GAGTAGGGCG
  GACTAGAGTG ACACTTAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47265559	NES11563426	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33173159					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47265559	NES11563426	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127441388 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19771	CpG island 19771	within coordinates
Gm72953	predicted gene, 72953	within coordinates
Rr153806	regulatory region 153806	1988 bp distal
Rr166763	regulatory region 166763	within coordinates
Rr400656	regulatory region 400656	500 bp downstream
Stx4a	syntaxin 4A (placental)	within coordinates
Tssr69296	transcription start site region 69296	1198 bp downstream
Tssr69297	transcription start site region 69297	473 bp downstream
Tssr69298	transcription start site region 69298	413 bp downstream
Tssr69299	transcription start site region 69299	369 bp downstream
Tssr69300	transcription start site region 69300	351 bp downstream
Tssr69301	transcription start site region 69301	336 bp downstream
Tssr69302	transcription start site region 69302	283 bp downstream
Tssr69303	transcription start site region 69303	254 bp downstream
Tssr75044	transcription start site region 75044	735 bp upstream
Tssr75045	transcription start site region 75045	249 bp downstream