rs33173213 SNP Detail

Summary

• ID
  rs33173213
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84824863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGTTCACC CTGCACAGAA GAGTCTGGCC CCACATAAGG
  TTCGCCAAAG GACCCTACCA CTCACCGAAG CTGGCCCTCT TCAGTGGGAG CTGGAAAGGC
  H
  AAGAGCAGCA GGCCAATGTT GATCAGGACC TGGTTGGTTT CTGGGCAGAC CTGGGAGCAG
  GCAGTGACAG TTAGACAGAG ATCCTAGAGT GGGAACACT                       
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C57BL/6J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss46243521	mCV23392734	ABI	CRAMUS_MOUSE	f	SNP	T		C
ss60642561	NES16272409	PERLEGEN	MM_PANEL2	f	SNP		A		C		C	C
ss145371917	ENSMUSSNP6766554	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss322747571	CHEV_8_86622133	CHEVERUD	SCREENING_POP	f	SNP					T			C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C57BL/6J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs33173213					SNP	T	A	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60642561	NES16272409	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84824863 () rs orientation: forward

Symbol	Name	Function Class
Dcaf15	DDB1 and CUL4 associated factor 15	within coordinates
Gm39210	predicted gene, 39210	within coordinates
Rfx1	regulatory factor X, 1 (influences HLA class II expression)	1242 bp downstream