rs33173446 SNP Detail

Summary

• ID
  rs33173446
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127397964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGGAGAG TGACGCCTGG
  AAGGAGTCCT CACTGCAGAG CTGGTGGTTA GAACTCTGCA AAGGGGGAGG TCACCTAGTG
  AGAGTGGCAA TTGCATTACC TATTTCCTGG GAATAGCTGC CCCTTGCAGC ACAAGGCCTT
  TGTCCTGGCA CAGACCATCT GCCATCTGCT CTCACCAGCT GCCCAGTAGG TGCCTGTGTA
  Y
  GAAGGCTAGT CCTAGGAAAG GCTTCAATTC AAGGCATGGC CACTGTCATT TCGGAAGCTG
  CCCCGGGCCC ACAGCATGTT ATGGACTCCA TCCACTATGG CCACACAGGT TCTCAGAAGA
  GCCAGTGCTG GTTTCCCCAG AGTCCCCTTC TGCTGACTTT GGATCAGAAT GGGTGGGAGC
  AGGTACACTC AGATGCCGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47265211	NES11565449	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33173446					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47265211	NES11565449	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127397964 () rs orientation: forward

Symbol	Name	Function Class
9430064I24Rik	RIKEN cDNA 9430064I24 gene	1302 bp downstream
Cpgi19768	CpG island 19768	258 bp proximal
Gm49388	predicted gene, 49388	within coordinates
Hsd3b7	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	1866 bp upstream
Rr655897	regulatory region 655897	1322 bp proximal
Rr655898	regulatory region 655898	1712 bp proximal
Setd1a	SET domain containing 1A	within coordinates
Tssr69292	transcription start site region 69292	1816 bp upstream
Tssr69293	transcription start site region 69293	1831 bp upstream
Tssr69294	transcription start site region 69294	1919 bp upstream