rs33173451 SNP Detail

Summary

• ID
  rs33173451
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127399489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAAATGCT TGGTCAGTAT
  CTTTGGGAAG AGCAGACTGG GATGCAAGTT GCCACAGTGG GTGAAGCAGG AGAGAGGGGG
  AATGGGTGGC TTTGAGTTTG GGGTGAATCA ACCTGCAGAC CGCAGTGCTG CTTTGGACCA
  ACCACCTAGA TACAACAAAC ATGCCAGATC TGTCTCACTA TGGATGCTAG CCAGAATTAT
  R
  TCAAGATCAG GTTTACCCTG CTCTCCCTCC CAGAACCATA GCTGGTGCTG GGCCTTCAGC
  CTACTGGGAG ACCCAGCAGG AGGGACAAAC ATATCAGTGA TGGGGGCATC CCTTCCCTAC
  CCTATTATCC TGAAATACAC TACCAAATGG GCAGGTTCTG TCCTTTGCCT GCCACTGAAG
  AGTGGACTGG CCACCAGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47265217	NES11565451	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33173451					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47265217	NES11565451	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127399489 () rs orientation: forward

Symbol	Name	Function Class
9430064I24Rik	RIKEN cDNA 9430064I24 gene	within coordinates
Cpgi19768	CpG island 19768	1036 bp distal
Gm49388	predicted gene, 49388	within coordinates
Hsd3b7	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	341 bp upstream
Rr655897	regulatory region 655897	within coordinates
Rr655898	regulatory region 655898	187 bp proximal
Rr655899	regulatory region 655899	1927 bp proximal
Setd1a	SET domain containing 1A	195 bp downstream
Tssr69292	transcription start site region 69292	291 bp upstream
Tssr69293	transcription start site region 69293	306 bp upstream
Tssr69294	transcription start site region 69294	394 bp upstream
Tssr69295	transcription start site region 69295	527 bp upstream