rs33173616 SNP Detail

Summary

• ID
  rs33173616
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121125100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAA TTGAGACCCA AACACTCTAC
  S
  GAGTCATTGT AAGATCATCT CTGAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45246114	mCV23082203	ABI	CRAMUS_MOUSE	f	SNP	G	C	G
ss147383113	ENSMUSSNP205635	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss320482558	CHEV_2_121120355	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33173616					SNP	G	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121125100 () rs orientation: forward

Symbol	Name	Function Class
Gm14978	predicted gene 14978	within coordinates
Map1a	microtubule-associated protein 1 A	Intron
Rr373768	regulatory region 373768	within coordinates
Rr563798	regulatory region 563798	1783 bp distal
Rr563799	regulatory region 563799	345 bp proximal
Rr563800	regulatory region 563800	846 bp proximal
Rr563801	regulatory region 563801	1379 bp proximal
Tssr19740	transcription start site region 19740	818 bp upstream