rs33173882 SNP Detail

Summary

• ID
  rs33173882
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155552367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCACTAC CCTAGGCAGG
  CCACTTCCTT CTGATCCCAG ACCAATATAA CCCAGGTCCT CTGCAAGAGC AGATCCTTCC
  CTTTTCTGGA CTCCAGACTT GGGTCCCAGC CTCGCACTGC ACTTTTGACA TCTACTCTTC
  CTATTGCTGG CCCTACGGTA CCAAGCACAG CCACGACACA GCAAAGGACA GAAACAGCAT
  R
  GGAACTAAGC TCATTGACCT GGCAGAGAGG GTCTTTGAGA GGCAAGGCAC AGGTCTCAAG
  TGCATAGGAC AGCTGTAGAA CTCCTACCCA CTGAGGGAAA AGCCAAAGAT ACATGCAGGT
  ATGTGCACAG TGAAGAAATG AAGGCAGGAC AGAGGGCTGG TACACCTCCT ATCCTCCCTT
  AGCCAGCCTG GTTGTGCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46780678	NES10992847	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33173882					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46780678	NES10992847	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155552367 () rs orientation: forward

Symbol	Name	Function Class
C030017K20Rik	RIKEN cDNA C030017K20 gene	1505 bp downstream
Cfap74	cilia and flagella associated protein 74	1087 bp downstream
Cpgi15469	CpG island 15469	1128 bp proximal
Gm69352	predicted gene, 69352	within coordinates
Rr606482	regulatory region 606482	1054 bp proximal
Rr606483	regulatory region 606483	1719 bp proximal
Tmem52	transmembrane protein 52	1204 bp upstream
Tssr40642	transcription start site region 40642	1306 bp downstream
Tssr40643	transcription start site region 40643	1213 bp upstream