rs33174215 SNP Detail

Summary

• ID
  rs33174215
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:145744978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGA AGCTTGCTTT TACGATTTGG
  Y
  TCTCTGACTC CAGCTTCTTT CTCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45246313	mCV23170950	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss320538609	CHEV_2_145728794	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs33174215					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145744978 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12364	CpG island 12364	within coordinates
Gm74898	predicted gene, 74898	within coordinates
Naa20	N(alpha)-acetyltransferase 20, NatB catalytic subunit	within coordinates
Rr55740	regulatory region 55740	within coordinates
Rr374012	regulatory region 374012	1320 bp downstream
Rr397366	regulatory region 397366	within coordinates
Tssr20600	transcription start site region 20600	164 bp upstream
Tssr20601	transcription start site region 20601	176 bp upstream
Tssr20602	transcription start site region 20602	832 bp upstream